These keto pizza muffins are super cheesy, high protein, and packed with classic pepperoni pizza flavor — all in convenient individually portioned muffins. They’re super easy to make, and no one will even think about the fact they’re keto, low carb, and gluten free, since they just taste like pizza!
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Each bite gives you the nostalgic taste of mini pizza bites, but with none of the carbs or processed ingredients you find in typical frozen snacks. Plus, they’re loaded with 16g of protein each thanks to the cottage cheese and eggs, so they’ll actually keep you full.
Why These Keto Pizza Muffins are the Best
- Perfect for meal prep: These store and reheat well, making them ideal for busy weeks.
- Tastes like pizza in every bite: Classic pepperoni and gooey mozzarella give that real pizza flavor—minus the carbs.
- High protein & low carb: Each muffin is satisfying, healthy, and won’t spike your blood sugar.
Ingredients Breakdown
Eggs
Eggs help everything bind together and give a nice, fluffy texture to the muffins.
Cottage Cheese
This adds creaminess, moisture, and a protein boost. Don’t worry, it doesn’t make the muffins taste like cottage cheese, and the texture is completely blended so you won’t notice it. It just makes them delicious and high in protein!
Almond Flour
The almond flour creates a hearty texture without any gluten or grains. I recommend using finely ground blanched almond flour.
Mozzarella Cheese
Mozzarella cheese is used both inside the batter and on top for that classic cheesy texture and flavor.
Pepperoni
Chopped or mini pepperoni pieces bring the classic pizza flavor. Feel free to substitute with turkey pepperoni or even Italian sausage if you prefer, or replace with veggies.
Italian Seasoning
Gives that pizza shop flavor! You can also add garlic powder or red pepper flakes if you want a little extra kick.
How to Make Keto Pizza Muffins
1. Preheat and prep your pan
Preheat your oven to 375°F and grab a 6-count silicone muffin pan. Silicone makes removal super easy, I like to grease it with a little oil spray just to double ensure zero sticking.
2. Blend the wet ingredients
Blend eggs and cottage cheese in a blender or food processor until smooth.
3. Combine batter
Transfer mixture to a bowl and stir in almond flour, Italian seasoning, ½ cup of the mozzarella, and 1 tbsp of chopped pepperoni.
3. Layer the muffins
Spoon half of the batter evenly into your muffin cups. Sprinkle about half of the remaining mozzarella on top of the batter.
4. Add the rest
Spoon the remaining batter over each muffin, then finish by topping with the rest of the mozzarella and pepperoni pieces.
5. Bake
Bake for 25 minutes or until the cheese is melted and the centers are set. Let them cool for 5–10 minutes before removing from the pan. Serve with no-sugar-added marinara sauce for dipping!
Tips for Success
- Use a silicone muffin pan: This makes removal easier and cleanup a breeze.
- Blend well: Make sure your batter is smooth—this helps the muffins rise evenly and hold together.
- Let them cool slightly: This helps the structure set and makes them easier to remove from the pan without breaking.
Keto Pizza Muffin Variations
- Veggie Supreme: Add chopped olives, mushrooms, or green peppers to the filling.
- Spicy Sausage: Swap pepperoni for cooked Italian sausage and add crushed red pepper flakes.
- Cheese-Lovers: Use a blend of mozzarella, parmesan, and provolone for a triple cheese effect.
FAQs
You can, but I personally preferred serving the sauce on the side for dipping!
You can microwave them for 20–30 seconds or reheat them in the oven or toaster oven at 350°F until warmed through.
I dont recommend it, as cottage cheese gives the best texture and protein content. If you’re not a fan of the flavor or texture of cottage cheese, don’t worry, it’s completely undetectable in this recipe.
Definitely! You can easily decrease the total amount of mozzarella used by not adding extra between the layers and just putting a light sprinkle of cheese on top. Another option is to use low fat or fat free cottage cheese and/or mozzarella cheese.
Try These Keto Pizza Muffins!
If you’re craving something cheesy, savory, and satisfying without the carbs, you have to try these keto pizza muffins. They’re quick to make, packed with flavor, and super versatile for snacks, meal prep, or even party appetizers. If you try them, let me know what you think in the comments and don’t forget to tag me on Instagram if you post a pic!
XO,
Sarah
Keto Pizza Muffins
Want to save this recipe?
I’ll email this post to you, so you can come back to it later! -Sarah
Ingredients
- 2 large eggs
- 1 cup cottage cheese
- 1 cup blanched almond flour
- 1 ¼ cups mozzarella cheese divided
- ¼ cup pepperoni chopped
- 1 tsp Italian seasoning
- Salt and pepper to taste
Instructions
- Preheat the oven: Set oven to 375°F.
- Prepare your pan: Use a 6-count silicone muffin pan.
- Blend wet ingredients: Blend eggs and cottage cheese in a blender or food processor until smooth.
- Combine batter: Transfer mixture to a bowl and stir in almond flour, Italian seasoning, salt & pepper if desired, ½ cup of the mozzarella, and 1 tbsp of chopped pepperoni.
- Add half the batter: Divide half the batter between the 6 muffin cups.
- Layer cheese and pepperoni: Sprinkle half of the remaining mozzarella and chopped pepperoni on top.
- Top with remaining batter: Spoon the rest of the batter over each muffin.
- Add final topping: Finish with remaining cheese and pepperoni.
- Bake: Bake for 25 minutes or until cheese is fully melted and centers are set.
- Cool before serving: Let muffins cool in the pan for 5–10 minutes before removing.
Notes
- Silicone Pan: Makes for easy removal and no sticking.
- Dipping Sauce: Serve with warm no sugar added marinara for dipping.
- Reheating: Warm in the microwave for 30 seconds or in the oven at 350°F.
- Storage: Refrigerate for up to 5 days or freeze in an airtight container.
- Pepperoni: Omit or use a meatless alternative for a vegetarian option. Turkey pepperoni can also be substituted.
These are so satisfying!! And amazing for making ahead and reheating!
These are simple to make and delicious! Everyone loved them.